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Showing posts with the label Bioinformatics

How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

I am using python to create a program that converts a set of DNA sequences into amino acid (protein… Read more How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

I'm trying to assign flat, single-linkage clusters to sequence IDs separated by an edit distanc… Read more Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

Sort Fasta By Sequence Size

I currently want to sort a hudge fasta file (+10**8 lines and sequences) by sequence size. fasta is… Read more Sort Fasta By Sequence Size

Finding Matching Keys In Two Large Dictionaries And Doing It Fast

I am trying to find corresponding keys in two different dictionaries. Each has about 600k entries.… Read more Finding Matching Keys In Two Large Dictionaries And Doing It Fast

Getting Intersection Of Two Lists In Python

I have two lists of genes that i'm analyzing. Essentially I want to sort the elements of these … Read more Getting Intersection Of Two Lists In Python

Using The Reserved Word "class" As Field Name In Django And Django Rest Framework

Description of the problem Taxonomy is the science of defining and naming groups of biological orga… Read more Using The Reserved Word "class" As Field Name In Django And Django Rest Framework